miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cucumis melo subsp. melo



ABOUT THIS RECORD

ID: MNEST000483
species: Cucumis melo subsp. melo
miRNA family: miR168a
source: miRNEST

Taxonomy by NCBI:
Cucumis melo subsp. melo Cucumis melo Cucumis Cucurbitaceae Cucurbitales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCCGCCTTGCATCAACTGAAT

miRNA*
TCGCTTGGTGCAGGTCGGGAA

mismatches: 2
bulges: 0

View larger
pre-miRNA
CTTCTTTTTGGTTCAGTCATCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGTTTCGCTTTTTGTTCACGTTGATCTTGATTGTTGTTGTTTCT
TTCAATTTCCTCTGCGTTGTTCAGGGGAAATATATATGTGTGTGTGTGTGTGTAATCGAGCGAATTGGATCCCGCCTTGCATCAACTGAATCCGAGACAG
CGATGAAGATTTCATGGATCTA


dot-bracket secondary structure
..(((...(((.((..((((((.(.(((((..(((((.((((((((((.(((((.(((.(((((((...((((((.((((....((.(......)..)).
.)))).((((((((.......))))))))((((((((....))))))))))).))).))))))).))).))))).)))))))))).)))))..))))).)
)))))).))..))).)))....



SIMILARITIES
miRBase crt-MIR168: 0.00000000000001

PMRD rco-miR168: 8e-16

microPC miR168: 5e-54
UniProt no hits

RFAM MIR168: 0.00000000000001
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;