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Species belonging to selected taxon:

Aedes aegypti, Culex quinquefasciatus, Anopheles gambiae, Anopheles stephensi



ABOUT THIS RECORD

ID: MNEST035167
species: Aedes aegypti
miRNA family: mir-2
source: miRBase, original name: aae-mir-2a (MI0013443)

Taxonomy by NCBI:
Aedes aegypti Stegomyia Aedes Aedes/Ochlerotatus group Culicini Culicinae Culicidae Culicoidea Culicimorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TATCACAGCCAGCTTTGAAGAGC

miRNA*
TCTCAAAGTGGTTGTGAAATG

mismatches: 2
bulges: 2

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pre-miRNA
TGGGAACTGTTTCCACTCTCAAAGTGGTTGTGAAATGAGTTACTCTTGAACGATCTCATATCACAGCCAGCTTTGAAGAGCGAAACGGTTTCTCGCA

dot-bracket secondary structure
.((((((((((((..((((((((((((((((((.(((((....((......)).))))).))))))))).))))).)))).))))))))))))....


SIMILARITIES
miRBase cqu-mir-2: 0.00000000002

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-2: 1e-34

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa

references

[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
[2] Li S, Mead EA, Liang S, Tu Z, BMC Genomics. 10:581(2009)., "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs"




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