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Species belonging to selected taxon:
Aedes aegypti
,
Culex quinquefasciatus
,
Anopheles gambiae
,
Anopheles stephensi
,
Polypedilum vanderplanki
ABOUT THIS RECORD
ID:
MNEST036064
species:
Culex quinquefasciatus
miRNA family:
mir-1889
source:
miRBase, original name:
cqu-mir-1889
(
MI0013628
)
Taxonomy by NCBI:
Culex quinquefasciatus
Culex pipiens complex
Culex
Culex
Culicini
Culicinae
Culicidae
Culicoidea
Culicimorpha
Nematocera
Diptera
Endopterygota
Neoptera
Pterygota
Dicondylia
Insecta
Hexapoda
Pancrustacea
Mandibulata
Arthropoda
Panarthropoda
Protostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TAATCTCAAATTGTAACAGTGG
miRNA*
ACGTTACAGATTGGGGTTTCC
mismatches:
2
bulges:
1
View larger
pre-miRNA
TTGCACCGTCCCGGAG
TAATCTCAAATTGTAACAGTGG
GTTTTTTCAACGGCAAAGCACAAACTTTGAAACGTCCCTCCGTTCGAGAGAACATTTGCTAT
ACCC
ACGTTACAGATTGGGGTTTCC
CCGGGTCGTGCCGT
dot-bracket secondary structure
..((((.(.(((((.(
.((((((((.(((((((.((((
((.......(((.(((((......)))))...)))......((((....)))).........
))))
))))))))).)))))))).).
))))).)))))...
SIMILARITIES
miRBase
aae-mir-1889
:
0.00000000003
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Solexa
references
[
1
] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR,
BMC Genomics. 11:119(2010).
,
"Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"