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Species belonging to selected taxon:

Aedes aegypti, Culex quinquefasciatus



ABOUT THIS RECORD

ID: MNEST035163
species: Aedes aegypti
miRNA family: bantam
source: miRBase, original name: aae-bantam (MI0013439)

Taxonomy by NCBI:
Aedes aegypti Stegomyia Aedes Aedes/Ochlerotatus group Culicini Culicinae Culicidae Culicoidea Culicimorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCGGTTTTCATTTTCGATCTGAC

miRNA*
GAGATCATTTTGAAAGCTGATT

mismatches: 6
bulges: 1

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pre-miRNA
AGAACCGGTTTTCATTTTCGATCTGACTTATTTGATTTAACAAGAGTGAGATCATTTTGAAAGCTGATTTT

dot-bracket secondary structure
.....(((((((((.....(((((.((((..(((......))))))).)))))....))))))))).....


SIMILARITIES
miRBase aae-bantam: 7e-35

PMRD no hits

microPC no hits
UniProt no hits

RFAM bantam: 1e-33

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
[2] Li S, Mead EA, Liang S, Tu Z, BMC Genomics. 10:581(2009)., "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs"




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