miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Drosophila melanogaster, Drosophila simulans, Glossina morsitans morsitans, Drosophila sechellia, Drosophila auraria, Drosophila pseudoobscura, Teleopsis dalmanni, Drosophila willistoni, Drosophila ananassae, Drosophila virilis, Drosophila erecta, Drosophila grimshawi, Ceratitis capitata, Drosophila mojavensis, Cochliomyia hominivorax, Haematobia irritans irritans, Drosophila yakuba



ABOUT THIS RECORD

ID: MNEST036932
species: Drosophila pseudoobscura
miRNA family: mir-99
source: miRBase, original name: dps-mir-100 (MI0001322)

Taxonomy by NCBI:
Drosophila pseudoobscura pseudoobscura subgroup obscura group Sophophora Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AACCCGTAATTCCGAACTTGTG

miRNA*
CAAGACCGGCATTATGGGAGTC

mismatches: 5
bulges: 0

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pre-miRNA
CCATTAACAGAAACCCGTAATTCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCA


dot-bracket secondary structure
.((((.(((((..((((((((.(((..(((((((.(........).).))))))..))).))))))))..))))).))))....................



SIMILARITIES
miRBase dme-mir-100: 1e-49

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

Identical with: dpe-mir-100-2 from miRBase (MNEST036856)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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