miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Danio rerio, Pimephales promelas, Cyprinus carpio, Misgurnus anguillicaudatus, Rutilus rutilus



ABOUT THIS RECORD

ID: MNEST034306
species: Danio rerio
miRNA family: mir-137
source: miRBase, original name: dre-mir-137-2 (MI0002001)

Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTATTGCTTAAGAATACGCGTA

miRNA*
CGGGTATTCTTGGGTGGATAATA

mismatches: 4
bulges: 1

View larger
pre-miRNA
GTTCTGTTGTTTCCCTCTATAAAGGACTCTCTTCGGTGACGGGTATTCTTGGGTGGATAATACGGCTCTCGTTGTTATTGCTTAAGAATACGCGTAGTCG
AGGAGAGTCATGTCGGCGGCGAGAGAGC


dot-bracket secondary structure
(((((.((((..((..(.......((((((((((((..(((.(((((((((((..(.(((((((.....)).))))))..))))))))))).)))..)))
)))))))))..)..))..)))).)))))



SIMILARITIES
miRBase dre-mir-137-1: 2e-39

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-137: 1e-50

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references

[1] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"




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