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Species belonging to selected taxon:

Danio rerio



ABOUT THIS RECORD

ID: MNEST034319
species: Danio rerio
miRNA family: mir-146
source: miRBase, original name: dre-mir-146b-1 (MI0002013)

Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGAACTGAATTCCAAGGGTG

miRNA*
CCCACGGAGTTCAGTTCTTAAG

mismatches: 4
bulges: 0

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pre-miRNA
GCTCTTGGCTTTGAGAACTGAATTCCAAGGGTGTCTGCTTTATATTCAGCCCACGGAGTTCAGTTCTTAAGTTTGGATGC

dot-bracket secondary structure
(((((..((((.((((((((((((((..((((................))))..))))))))))))))))))..))).))


SIMILARITIES
miRBase dre-mir-146b-2: 4e-40

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-146: 6e-39

Identical with: dre-mir-146b-2 from miRBase (MNEST034320)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence

references

[1] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"




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