miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Amphimedon queenslandica, Suberites domuncula, Oscarella carmela



ABOUT THIS RECORD

ID: MNEST039295
species: Amphimedon queenslandica
source: miRBase, original name: aqu-mir-2016 (MI0010224)

Taxonomy by NCBI:
Amphimedon queenslandica Amphimedon Niphatidae Haplosclerida Ceractinomorpha Demospongiae Porifera Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAGATTGGGCTTGGTCGGCAGA

miRNA*
TGCTGTCCAGTCTTAATCTACA

mismatches: 2
bulges: 0

View larger
pre-miRNA
TGTAGATTGGGCTTGGTCGGCAGATGATTAAAAGAGATTAAGTTTTTGTCCTTTTTCAAAAGAAGACACTAGCTTGATGCAACTCTTAAATCTGCTGTCC
AGTCTTAATCTACA
GG


dot-bracket secondary structure
(((((((((((.((((.((((((((......(((((((((((((..((((.((((....)))).))))..))))))))....)))))..)))))))).))
)).)))))))))))
..



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP, Nature. 455:1193-1197(2008)., "Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals"
[2] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




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