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Species belonging to selected taxon:
Mus musculus
,
Sus scrofa
,
Bos taurus
,
Danio rerio
,
Ciona intestinalis
,
Rattus norvegicus
,
Xenopus laevis
,
Oryzias latipes
,
Gallus gallus
,
Salmo salar
,
Canis lupus familiaris
,
Ictalurus punctatus
,
Ovis aries
,
Branchiostoma floridae
,
Oncorhynchus mykiss
,
Gasterosteus aculeatus
,
Pimephales promelas
,
Gadus morhua
,
Macaca fascicularis
,
Anolis carolinensis
,
Trichosurus vulpecula
,
Papio anubis
,
Paracentrotus lividus
,
Ictalurus furcatus
,
Homo sapiens
,
Saccoglossus kowalevskii
,
Strongylocentrotus purpuratus
,
Petromyzon marinus
,
Oreochromis niloticus
,
Molgula tectiformis
,
Taeniopygia guttata
,
Ciona savignyi
,
Peromyscus maniculatus bairdii
,
Fundulus heteroclitus
,
Sparus aurata
,
Halocynthia roretzi
,
Patiria pectinifera
,
Dicentrarchus labrax
,
Pongo abelii
,
Ursus americanus
,
Equus caballus
,
Dissostichus mawsoni
,
Osmerus mordax
,
Oryctolagus cuniculus
,
Macaca nemestrina
,
Anoplopoma fimbria
,
Cyprinus carpio
,
Esox lucius
,
Squalus acanthias
,
Leucoraja erinacea
,
Rana catesbeiana
,
Takifugu rubripes
,
Cynops pyrrhogaster
,
Eptatretus burgeri
,
Sebastes caurinus
,
Misgurnus anguillicaudatus
,
Perca flavescens
,
Paralabidochromis chilotes
,
Hippoglossus hippoglossus
,
Ambystoma tigrinum tigrinum
,
Cavia porcellus
,
Bos indicus
,
Rutilus rutilus
,
Meleagris gallopavo
,
Lonchura striata domestica
,
Poecilia reticulata
,
Bos sp.
,
Macropus eugenii
,
Peromyscus polionotus subgriseus
,
Oncorhynchus tshawytscha
,
Capra hircus
,
Paralichthys olivaceus
,
Psetta maxima
,
Pan troglodytes verus
,
Spadella cephaloptera
,
Lates calcarifer
,
Oncorhynchus nerka
,
Sebastes rastrelliger
,
Thymallus thymallus
,
Solea senegalensis
,
Coregonus clupeaformis
,
Torpedo californica
,
Thunnus thynnus
,
Cynoglossus semilaevis
,
Salvelinus fontinalis
,
Macaca mulatta
ABOUT THIS RECORD
ID:
MNEST032067
species:
Mus musculus
miRNA family:
mir-423
source:
miRBase, original name:
mmu-mir-423
(
MI0004637
)
Taxonomy by NCBI:
Mus musculus
Mus
Mus
Murinae
Muridae
Muroidea
Sciurognathi
Rodentia
Glires
Euarchontoglires
Eutheria
Theria
Mammalia
Amniota
Tetrapoda
Sarcopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGCTCGGTCTGAGGCCCCTCAGT
miRNA*
TGAGGGGCAGAGAGCGAGACTTT
mismatches:
3
bulges:
2
View larger
pre-miRNA
ACTTGTGAGGAAATAAAGGAAGTTAGGC
TGAGGGGCAGAGAGCGAGACTTT
TCTATTTTCCAAA
AGCTCGGTCTGAGGCCCCTCAGT
CTTGCTTCCTACC
CCGCGCTTG
dot-bracket secondary structure
....(((.((......(((((((.((((
((((((((..(((.((((.((((
(.........)))
)))))).)))...))))))))))
)).)))))))...
)).)))...
SIMILARITIES
miRBase
mmu-mir-423
:
3e-57
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-423: 2e-39
Identical with:
ppy-mir-423
from miRBase (
MNEST030999
)
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
MPSS, cloned, Solexa
references
[
1
] Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP,
Genes Dev. 24:992-1009(2010).
,
"Mammalian microRNAs: experimental evaluation of novel and previously annotated genes"
[
2
] Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M,
Cell. 129:1401-1414(2007).
,
"A mammalian microRNA expression atlas based on small RNA library sequencing"
[
3
] Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I,
Nucleic Acids Res. 34:1765-1771(2006).
,
"The expression profile of microRNAs in mouse embryos"
[
4
] Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A,
Mol Hum Reprod. 16:463-471(2010).
,
"MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing"