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Species belonging to selected taxon:

Dioscorea alata



ABOUT THIS RECORD

ID: MNEST000540
species: Dioscorea alata
miRNA family: MIR869
source: miRNEST

Taxonomy by NCBI:
Dioscorea alata Dioscorea Dioscoreaceae Dioscoreales Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CATGGTTCAATGCTGGTGTGA

miRNA*
ATCCTAGTATTTCCATAAA

mismatches: 3
bulges: 2

View larger
pre-miRNA
TTACTCTAGAGCAGAATTCATCGACGAGGATGGTGAGCTTTCATGGTTCAATGCTGGTGTGAGAGTTGGTGTGGGTATCGGCCTTGGAGTCTGCGTAGGC
GTTGGCATCGGCGTCAGTTTACTTATTCGAACATATCAAGCAACCACTCGGAACTTTAGACGACGGCTCATTTGATGCCGAGACAACTAGTTTTATCATC
CTAGTATTTCCATAAA
GCAGCTAACTTTGTGTTCTCTTTCATGGAGTTTGTTCA


dot-bracket secondary structure
........(((((((.(((((.((.(((((((((.((((((.((((...((((((((.((((((((.(((((.((((((((.....((((..((...(((
((((....))))))).))..))))..))))...))))..)).))))))).(((((........((((((....)).))))........)))))..)))).
)))))))).)))).))
..)))).)))....)))))).)).))))).))))))).



SIMILARITIES
miRBase no hits

PMRD gma-miR869: 0.0000000002

microPC no hits
UniProt sp|Q8GUH2|Y1015_ARATH: 0.0005

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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