ABOUT THIS RECORDspecies: Aedes aegypti
miRNA family: mir-2
source: miRBase, original name: aae-mir-2b (MI0013512)
Taxonomy by NCBI:
Aedes aegypti Stegomyia Aedes Aedes/Ochlerotatus group Culicini Culicinae Culicidae Culicoidea Culicimorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATCACAGCCAGCTTTGATGAGCT miRNA* ACTCTCAAAGTGGCTGTGAAATG mismatches: 1 bulges: 3 |
pre-miRNA
GGGCGTATTCTAGACTCTCAAAGTGGCTGTGAAATGGTTTTATTTTGCTCATATCACAGCCAGCTTTGATGAGCTGGACTGCGCACC
dot-bracket secondary structure
(((((((.(((((.((((((((((((((((((.(((((........)).))).))))))))).)))))).)))))))).))))).))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Li S, Mead EA, Liang S, Tu Z, BMC Genomics. 10:581(2009)., "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs"
GGGCGTATTCTAGACTCTCAAAGTGGCTGTGAAATGGTTTTATTTTGCTCATATCACAGCCAGCTTTGATGAGCTGGACTGCGCACC
dot-bracket secondary structure
(((((((.(((((.((((((((((((((((((.(((((........)).))).))))))))).)))))).)))))))).))))).))
SIMILARITIES| miRBase aga-mir-2-1: 0.000000004 PMRD no hits microPC no hits | UniProt no hits RFAM mir-2: 4e-31 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Li S, Mead EA, Liang S, Tu Z, BMC Genomics. 10:581(2009)., "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs"
