miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Drosophila melanogaster, Aedes aegypti, Culex quinquefasciatus, Anopheles gambiae, Drosophila simulans, Glossina morsitans morsitans, Phlebotomus papatasi, Drosophila sechellia, Drosophila auraria, Drosophila pseudoobscura, Teleopsis dalmanni, Lutzomyia longipalpis, Drosophila willistoni, Drosophila ananassae, Drosophila virilis, Drosophila erecta, Drosophila grimshawi, Ceratitis capitata, Drosophila mojavensis, Cochliomyia hominivorax, Anopheles stephensi, Haematobia irritans irritans, Polypedilum vanderplanki, Drosophila yakuba



ABOUT THIS RECORD

ID: MNEST036906
species: Drosophila pseudoobscura
miRNA family: mir-4
source: miRBase, original name: dps-mir-4 (MI0001296)

Taxonomy by NCBI:
Drosophila pseudoobscura pseudoobscura subgroup obscura group Sophophora Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATAAAGCTAGACAACCATTGA

miRNA*
TTTGGTCGTCCAGCCTTAGGTGA

mismatches: 7
bulges: 2

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pre-miRNA
TTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGG

dot-bracket secondary structure
(..((((.(..(((..((((.(((.(((.....((((((.....))))))...))).))).))))..)))..).))))..)


SIMILARITIES
miRBase dgr-mir-4-1: 9e-41

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

Identical with: dgr-mir-4-1 from miRBase (MNEST036242)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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