miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Lottia gigantea



ABOUT THIS RECORD

ID: MNEST038877
species: Lottia gigantea
miRNA family: mir-216
source: miRBase, original name: lgi-mir-216b (MI0010130)

Taxonomy by NCBI:
Lottia gigantea Lottia Lottiidae Acmaeioidea Nacellina Docoglossa Eogastropoda Gastropoda Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAATATCAGCTGGTAATCCTGAG

miRNA*
CAGGATTTTGGTTGATATTAAA

mismatches: 2
bulges: 1

View larger
pre-miRNA
TCTGTAATATCAGCTGGTAATCCTGAGTTACTGATTATCTCAGGATTTTGGTTGATATTAAACA

dot-bracket secondary structure
....((((((((((..(.(((((((((...........))))))))))..))))))))))....


SIMILARITIES
miRBase lgi-mir-216a: 0.0007

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




Liczniki na strone;