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Species belonging to selected taxon:

Drosophila melanogaster, Drosophila simulans, Drosophila sechellia, Drosophila auraria, Drosophila pseudoobscura, Drosophila willistoni, Drosophila ananassae, Drosophila virilis, Drosophila virilis, Drosophila erecta, Drosophila grimshawi, Drosophila mojavensis, Drosophila mojavensis, Drosophila yakuba



ABOUT THIS RECORD

ID: MNEST036396
species: Drosophila melanogaster
miRNA family: mir-190
source: miRBase, original name: dme-mir-190 (MI0005808)

Taxonomy by NCBI:
Drosophila melanogaster melanogaster subgroup melanogaster group Sophophora Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCCAGGAATCAAACATATTATT

miRNA*
GATATGTTTGATATTCTTGGTTG

mismatches: 1
bulges: 3

View larger
pre-miRNA
CGAACTAATTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGC


dot-bracket secondary structure
..........((.(((..((((((((((((((((((..((((((.((...(........)..)).)))))))))))))))))).))))))..))).))..



SIMILARITIES
miRBase dme-mir-190: 5e-52

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-190: 2e-42

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC, Genome Res. 17:1850-1864(2007)., "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs"
[2] Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M, Genome Res. 17:1865-1879(2007)., "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes"




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