miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Drosophila melanogaster, Drosophila simulans, Drosophila sechellia, Drosophila auraria, Drosophila pseudoobscura, Drosophila willistoni, Drosophila ananassae, Drosophila virilis, Drosophila erecta, Drosophila grimshawi, Drosophila mojavensis, Drosophila yakuba



ABOUT THIS RECORD

ID: MNEST036438
species: Drosophila melanogaster
miRNA family: mir-287
source: miRBase, original name: dme-mir-287 (MI0000381)

Taxonomy by NCBI:
Drosophila melanogaster melanogaster subgroup melanogaster group Sophophora Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGTGTTGAAAATCGTTTGCAC

miRNA*
GAAATTTTGCACACATT

mismatches: 3
bulges: 4

View larger
pre-miRNA
GGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGA

dot-bracket secondary structure
..(((((.(.......).))))).((.(((((((((((((..(((((((((((.....)))))))))))...)))..)))).)).)))).)).


SIMILARITIES
miRBase der-mir-287: 6e-36

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-287: 1e-34

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern

references

[1] Lai EC, Tomancak P, Williams RW, Rubin GM, Genome Biol. 4:R42(2003)., "Computational identification of Drosophila microRNA genes"




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