miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Paracentrotus lividus
,
Strongylocentrotus purpuratus
ABOUT THIS RECORD
ID:
MNEST034826
species:
Strongylocentrotus purpuratus
miRNA family:
mir-153
source:
miRBase, original name:
spu-mir-153
(
MI0010205
)
Taxonomy by NCBI:
Strongylocentrotus purpuratus
Strongylocentrotus
Strongylocentrotidae
Echinoida
Echinacea
Euechinoidea
Echinoidea
Echinozoa
Eleutherozoa
Echinodermata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGCATAGTCACAAAAGTGATT
miRNA*
TCATTTTTGTGTTTATGCAACT
mismatches:
1
bulges:
0
View larger
pre-miRNA
CCCGCCAGCCCGA
TCATTTTTGTGTTTATGCAACT
TTTGTATTTTCACCGATCAGAGTAG
TTGCATAGTCACAAAAGTGATT
GGGAGGGTTGGGCTCTAA
C
dot-bracket secondary structure
((((((..(((((
(((((((((((.((((((((((
((((.(((......)))))))..))
)))))))).)))))))))))))
)))..)).))))......
.
SIMILARITIES
miRBase
sko-mir-153
:
0.00000008
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-153: 1e-46
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
references
[
1
] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M,
Evol Dev. 13:15-27(2011).
,
"microRNA complements in deuterostomes: origin and evolution of microRNAs"
[
2
] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ,
Evol Dev. 11:50-68(2009).
,
"The deep evolution of metazoan microRNAs"