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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST003812
species:
Oryza sativa
miRNA family:
MIRf34
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTTAGGACAGAGGGAGTAGG
miRNA*
TACTTCCTCTATCCCAAAATA
mismatches:
4
bulges:
0
View larger
pre-miRNA
TTTCCCTACTTG
TACTTCCTCTATCCCAAAATA
AACCAACCTCATACCGGATGTGACATATCCTAGTGCGATGAATCGAGCCACCATTGTGTCCAGATTC
ATTATAAGAGGATGTGTTAAATCCCGTACGAGTTTGGTTTA
TTTTAGGACAGAGGGAGTAGG
TGGTAGCCT
dot-bracket secondary structure
.....(((((..
((((((((((.(((.((((((
((((((.(((.(((.((((.(((((((((((..((.((((((((....(((....)))....)))))
))).))..))))))))))).)))).))).))).))))))))
)))).))).))))))))))..
.)))))...
SIMILARITIES
miRBase
osa-MIR1862b
:
0.000000009
PMRD
osa-miR1862b
:
0.000000009
microPC
no hits
UniProt
no hits
RFAM
MIR1122: 0.0000000000002
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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