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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST003930
species:
Oryza sativa
miRNA family:
MIRf341
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATGTAAGTCATTCTAGCATGT
miRNA*
ATGGTAAAATGACGTTATATTA
mismatches:
3
bulges:
1
View larger
pre-miRNA
TGCGTTTCACA
ATGTAAGTCATTCTAGCATGT
CCCAGATTTATATTGATGGTAATGAATCTAGACATATATAGTTATCTGGATTCATTAGCAGTCGATAT
GGAATGTGGGAA
ATGGTAAAATGACGTTATATTA
TGAGACGG
dot-bracket secondary structure
..(((((((.(
((((((((((((.((.(((.(
((((.((((((((((((..(((((((((((((............)))))))))))))...))))))))
.)))).))))).
))).)).)))))).))))))).
))))))).
SIMILARITIES
miRBase
osa-MIR441c
:
9e-30
PMRD
osa-miR441c
:
9e-30
microPC
miR809
:
0.0000000000001
UniProt
no hits
RFAM
MIR1122: 4e-26
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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