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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST003961
species:
Oryza sativa
miRNA family:
MIRf34
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GGTTGCACTTATTTTGGGACG
miRNA*
TTTTTTAATAGATGACGCCGC
mismatches:
5
bulges:
0
View larger
pre-miRNA
CGGAAACTCAT
GGTTGCACTTATTTTGGGACG
GAGGTAGTAAGTCATAAGTACATGATTTGAGTATTAATTTACTGTAAACTTAAAAATGAGTCTATTTG
ATTTCCTTACAAAGATTTTTGCATAGAAAATTTTTGTATGAAACGTACTCCCCTCCG
TTTTTTAATAGATGACGCCGC
TGATTTTT
dot-bracket secondary structure
..((((.((((
(((..((.(((((..((((((
((((....(((((((......)))))))((((((..(((....(((.(((((....))))).)))..)
))(((..(((((((((((((.....))))))))))))).)))..)))))).))))))
))))..))))).))..)))).
))).))))
SIMILARITIES
miRBase
osa-MIR812a
:
0.000009
PMRD
osa-miRf10381-akr
:
0.000009
microPC
miR1439
:
0.0001
UniProt
no hits
RFAM
MIR806: 0.0000000000008
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
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