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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST004174
species:
Oryza sativa
miRNA family:
MIRf34
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGGCAATGCTAGAAAGTCTT
miRNA*
GACTTTCTAACATTGTCCACA
mismatches:
1
bulges:
0
View larger
pre-miRNA
CTTCCTCCGTTTAACAGTGTAA
GACTTTCTAACATTGTCCACA
TTCATATAGATTTTAATGAATCTAAACATATATGTGTGTCTAGATTCATTAACATCA
ATATGAATG
TGGGCAATGCTAGAAAGTCTT
ACATCGTGAAACGGAGGGA
dot-bracket secondary structure
.(((((((((((.((.((((((
(((((((((.(((((((((((
(((((((.(((.((((((((((((.(((((....))))).)))))))))))).))).
)))))))))
))))))))).)))))))))))
)))).)).)))))))))))
SIMILARITIES
miRBase
osa-MIR819k
:
5e-44
PMRD
osa-miR819k
:
5e-44
microPC
miR446
:
2e-43
UniProt
no hits
RFAM
MIR1122: 2e-49
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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