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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST045488
species:
Oryza sativa
source:
microPC, original name:
miR171
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GATTGAGCCGCGTCAATATC
miRNA*
TATTGGCGTGCCTCAATCCG
mismatches:
1
bulges:
0
View larger
pre-miRNA
GG
TATTGGCGTGCCTCAATCCG
AAGGCATGGCTGATTACAGGCACCTCGACCGATCTAGCGCATGCAGCCATGTTTCTTG
GATTGAGCCGCGTCAATATC
dot-bracket secondary structure
((
((((((((((.(((((((((
((((((((((((.......((..((.((....)).)).))...))))))))))).)))
))))))).))))))))))))
SIMILARITIES
miRBase
osa-MIR171i
:
5e-52
PMRD
osa-miR171i
:
5e-52
microPC
miR171
:
5e-52
UniProt
no hits
RFAM
MIR171_1: 9e-51
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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