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Species belonging to selected taxon:

Oryza sativa



ABOUT THIS RECORD

ID: MNEST004579
species: Oryza sativa
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATATAAGTCATTCTAGCATAT

miRNA*
ATGCTAAAATGACTTACATTG

mismatches: 4
bulges: 0

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pre-miRNA
CCTTGCTACTTCCTCCGTTTCACAATATAAGTCATTCTAGCATATCCCACATTCATATTGATGTTAATGAATCTAAACATCAATATGAATGTGGAAAATG
CTAAAATGACTTACATTG
TGAAACGGAGGGAGTAGCAAT


dot-bracket secondary structure
..((((((((((((((((((((((((.(((((((((.((((((...(((((((((((((((((((..........)))))))))))))))))))...)))
))).))))))))).))))
)))))))))))))))))))).



SIMILARITIES
miRBase osa-MIR809b: 2e-34

PMRD osa-miR809b: 2e-34

microPC miR809: 0.0000000000001
UniProt no hits

RFAM MIR1122: 1e-69
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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