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Species belonging to selected taxon:

Ciona intestinalis, Ciona savignyi



ABOUT THIS RECORD

ID: MNEST025323
species: Ciona savignyi
miRNA family: mir-92
source: miRBase, original name: csa-mir-92c (MI0007191)

Taxonomy by NCBI:
Ciona savignyi Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TATTGCACCTGTCCCGGCCGAT

miRNA*
CGGCCGAGTGTGGTGTATTGTACT

mismatches: 5
bulges: 2

View larger
pre-miRNA
GTATATAGCAGTCAGGAACGGCCGAGTGTGGTGTATTGTACTCGTAGAAATAACAGTATTGCACCTGTCCCGGCCGATCTTGGGTGCGCCT

dot-bracket secondary structure
.......(((.((((((.((((((.(...((((((..(((((..((....))..)))))))))))...).)))))).)))))).)))....


SIMILARITIES
miRBase cin-mir-92d: 0.000001

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"




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