miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Drosophila melanogaster, Drosophila simulans, Glossina morsitans morsitans, Drosophila sechellia, Drosophila auraria, Drosophila pseudoobscura, Teleopsis dalmanni, Drosophila willistoni, Drosophila ananassae, Drosophila virilis, Drosophila erecta, Drosophila grimshawi, Ceratitis capitata, Drosophila mojavensis, Cochliomyia hominivorax, Haematobia irritans irritans, Drosophila yakuba



ABOUT THIS RECORD

ID: MNEST009685
species: Haematobia irritans irritans
miRNA family: mir-1322
source: miRNEST

Taxonomy by NCBI:
Haematobia irritans irritans Haematobia irritans Haematobia Stomoxyini Muscinae Muscidae Muscoidea Calyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GATGCTGCTGCTGTTGCTGTT

miRNA*
CTTTACAGCAGCAGCATTTG

mismatches: 3
bulges: 1

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pre-miRNA
GTTAACGGAGCCTGTGAATGTTGTTGCGGATGATGCTGCTGCTGTTGCTGTTGTATGATATGGACATGCGGCTGAACGTAATTAACTTGGTTATAGCCTT
GGATCCCGGGCGCAATGTATAGACCGCCAACCGTAGCTGCTGTCCCAAGTCTTAACTTTACAGCAGCAGCATTTGCTGCAGCAGCAATTACAGCTGCATT
CTC


dot-bracket secondary structure
........(((.(((((.(((((((((((..((((((((((((((....((((...(((.((((((.(((((((............(((..(((.(((((
((...))))).)).)))..)))...........)))))))))).))).))).))))...))))))))))))))..))))))))))).)))))))).....
...



SIMILARITIES
miRBase no hits

PMRD ptc-miRf10957-akr: 0.0006

microPC no hits
UniProt no hits

RFAM mir-598: 0.0007
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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