ABOUT THIS RECORDspecies: Cavia porcellus
miRNA family: mir-1195
source: miRNEST
Taxonomy by NCBI:
Cavia porcellus Cavia Caviidae Hystricognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGTTCAAGGCCAGCCTGAA miRNA* CGGGCTGCAGGAATTCGAA mismatches: 4 bulges: 2 |
pre-miRNA
CGGCGCCTAAACTAGTGGATCCCCGGGCTGCAGGAATTCGAATTCCTCTCTTTCCTTCTACTCCCAAAGAAAAGTCCATGAGAGCTGGCTGTGGTAGTAT
ACACCTGTAATTTTAGCACTCAGGAGGCTGAGGCAGGAGGATCGCCCTGAGTTCAAGGCCAGCCTGAACTTCATGGTGGAACCTACAT
dot-bracket secondary structure
..((((((................)))).)).((((...((.....))...))))...((((.(((.((...(((........)))..)).))).)))).
...(((((...((((((.........)))))))))))(((.(((((.((((((((.((....))))))).))).)))))..)))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CGGCGCCTAAACTAGTGGATCCCCGGGCTGCAGGAATTCGAATTCCTCTCTTTCCTTCTACTCCCAAAGAAAAGTCCATGAGAGCTGGCTGTGGTAGTAT
ACACCTGTAATTTTAGCACTCAGGAGGCTGAGGCAGGAGGATCGCCCTGAGTTCAAGGCCAGCCTGAACTTCATGGTGGAACCTACAT
dot-bracket secondary structure
..((((((................)))).)).((((...((.....))...))))...((((.(((.((...(((........)))..)).))).)))).
...(((((...((((((.........)))))))))))(((.(((((.((((((((.((....))))))).))).)))))..)))....
SIMILARITIES| miRBase mmu-mir-3470a: 0.0006 PMRD no hits microPC no hits | UniProt no hits RFAM 7SK: 0.00000000001 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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