miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Rattus norvegicus, Macaca fascicularis, Papio anubis, Homo sapiens, Peromyscus maniculatus bairdii, Pongo abelii, Oryctolagus cuniculus, Macaca nemestrina, Cavia porcellus, Peromyscus polionotus subgriseus, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST028653
species: Homo sapiens
miRNA family: mir-448
source: miRBase, original name: hsa-mir-448 (MI0001637)

Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGCATATGTAGGATGTCCCAT

miRNA*
TGAACATCCTGCATAGTGCTGCC

mismatches: 3
bulges: 1

View larger
pre-miRNA
GCCGGGAGGTTGAACATCCTGCATAGTGCTGCCAGGAAATCCCTATTTCATATAAGAGGGGGCTGGCTGGTTGCATATGTAGGATGTCCCATCTCCCAGC
CCACTTCGTCA


dot-bracket secondary structure
((.(((((((.(.((((((((((((.(((.(((((..(..((((...((......))))))..)..))))).))))))))))))))).).))))))).))
...........



SIMILARITIES
miRBase ppy-mir-448: 2e-58

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-448: 4e-41

Identical with: ptr-mir-448 from miRBase (MNEST030376)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references

[1] Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M, Nature. 434:338-345(2005)., "Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals"




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