miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Rattus norvegicus, Macaca fascicularis, Papio anubis, Homo sapiens, Peromyscus maniculatus bairdii, Pongo abelii, Oryctolagus cuniculus, Macaca nemestrina, Cavia porcellus, Peromyscus polionotus subgriseus, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST028836
species: Homo sapiens
miRNA family: mir-548
source: miRBase, original name: hsa-mir-548i-1 (MI0006421)

Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AAAAGTAATTGCGGATTTTGCC

miRNA*
 CAAAAATAGCAATTATTTTTGT

mismatches: 3
bulges: 0
View larger
pre-miRNA
 CAGATGGCTCTGAAGTTTGCACCCTATTAGGTTGGTGCAAAAGTAATTGCGGATTTTGCCATTAAAAGTAATGGCAAAAATAGCAATTATTTTTGTACCA
GCCTAGTATCTTTTCTCCTTCTACCAAACTTTGTCCCTGAGCCATCTCA

dot-bracket secondary structure
.(((((((((.((((((((.....((((((((((((((((((((((((((...(((((((((((....)))))))))))...))))))))))))))))))
))))))))................))))))))......)))))))))..


SIMILARITIES
miRBase ptr-mir-548i-1: 1e-75

PMRD no hits

microPC no hits		UniProt no hits

RFAM mir-548: 1e-38

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references
[1] Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA, Genome Res. 18:610-621(2008)., "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells"



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