ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: miR-709
source: miRNEST
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAGGCAGAGGCAGGAGGA miRNA* CACCTGGCTCTTCCTCCAG mismatches: 3 bulges: 0 |
pre-miRNA
GGGGCCGTTTGTGGTGGCGCACGCCGGTAGGATTTGCTGAAGGAGGCAGAGGCAGGAGGATCACGAGTTCGGGGTCAGCCTGAGCTACACAGAGGAACCC
GCCACACCTTTTTGTTTTTGAGGCAGGTTCTTCAAACTCAAAGATCCACCTGGCTCTTCCTCCAGAGTGCTGGCACTCGGGTTAAAGGTGTATGCCAGCA
TAC
dot-bracket secondary structure
..(((.((((.(((((.....)))))...))))..)))...(((((.((((.((((.(((((..(((((((((.....)))))........((((((((.
(((.((............)).))).))))))))..))))...))))).)))).)))).)))))...(((((((((..((.........))..))))))))
)..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGGGCCGTTTGTGGTGGCGCACGCCGGTAGGATTTGCTGAAGGAGGCAGAGGCAGGAGGATCACGAGTTCGGGGTCAGCCTGAGCTACACAGAGGAACCC
GCCACACCTTTTTGTTTTTGAGGCAGGTTCTTCAAACTCAAAGATCCACCTGGCTCTTCCTCCAGAGTGCTGGCACTCGGGTTAAAGGTGTATGCCAGCA
TAC
dot-bracket secondary structure
..(((.((((.(((((.....)))))...))))..)))...(((((.((((.((((.(((((..(((((((((.....)))))........((((((((.
(((.((............)).))).))))))))..))))...))))).)))).)))).)))))...(((((((((..((.........))..))))))))
)..
SIMILARITIES| miRBase mmu-mir-709: 0.0006 PMRD no hits microPC no hits | UniProt no hits RFAM Metazoa_SRP: 0.00005 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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