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Species belonging to selected taxon:
Oryzias latipes
,
Salmo salar
,
Oncorhynchus mykiss
,
Gasterosteus aculeatus
,
Gadus morhua
,
Oreochromis niloticus
,
Fundulus heteroclitus
,
Sparus aurata
,
Dicentrarchus labrax
,
Dissostichus mawsoni
,
Osmerus mordax
,
Anoplopoma fimbria
,
Esox lucius
,
Takifugu rubripes
,
Sebastes caurinus
,
Perca flavescens
,
Paralabidochromis chilotes
,
Hippoglossus hippoglossus
,
Poecilia reticulata
,
Oncorhynchus tshawytscha
,
Paralichthys olivaceus
,
Psetta maxima
,
Lates calcarifer
,
Oncorhynchus nerka
,
Sebastes rastrelliger
,
Thymallus thymallus
,
Solea senegalensis
,
Coregonus clupeaformis
,
Thunnus thynnus
,
Cynoglossus semilaevis
,
Salvelinus fontinalis
ABOUT THIS RECORD
ID:
MNEST009829
species:
Lates calcarifer
miRNA family:
miR-466h
source:
miRNEST
Taxonomy by NCBI:
Lates calcarifer
Lates
Latidae
Percoidei
Perciformes
Percomorpha
Euacanthopterygii
Acanthopterygii
Holacanthopterygii
Euacanthomorpha
Acanthomorpha
Ctenosquamata
Eurypterygii
Neoteleostei
Neognathi
Euteleostei
Clupeocephala
Elopocephala
Teleostei
Neopterygii
Actinopteri
Actinopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CACGCACGCACACATACACAC
miRNA*
GTGAGAATGTGTGCATGTGTGTG
mismatches:
2
bulges:
2
View larger
pre-miRNA
CTGT
GTGAGAATGTGTGCATGTGTGTG
CGTGTGTGTGTGTTTTGTGCATGTTAGCAGGCTGACAGACCTGTTCCAAACAGGTGTGTATCGCCTGTAAACA
GAATTTATTTTGCAGCACACGTGCTGACGCAGACACACACTGATATTGAAACCAGAAGCTGAACTCTGTCTCAAGCTCAGCA
CACGCACGCACACATACA
CAC
ACAC
dot-bracket secondary structure
.(((
(((...((((((((.((((((((
(((((((.((((((.(((((.((((.((((((..(((.(((((((...))))))).)))...)))))).))))
(((....)))....)))))......)))))).))))))..(((..((((.((.(((........))))).))))..))))))
)))))).)))))))).))
)))
)...
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record