miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Oryzias latipes, Salmo salar, Oncorhynchus mykiss, Gasterosteus aculeatus, Gadus morhua, Oreochromis niloticus, Fundulus heteroclitus, Sparus aurata, Dicentrarchus labrax, Dissostichus mawsoni, Osmerus mordax, Anoplopoma fimbria, Esox lucius, Takifugu rubripes, Sebastes caurinus, Perca flavescens, Paralabidochromis chilotes, Hippoglossus hippoglossus, Poecilia reticulata, Oncorhynchus tshawytscha, Paralichthys olivaceus, Psetta maxima, Lates calcarifer, Oncorhynchus nerka, Sebastes rastrelliger, Thymallus thymallus, Solea senegalensis, Coregonus clupeaformis, Thunnus thynnus, Cynoglossus semilaevis, Salvelinus fontinalis



ABOUT THIS RECORD

ID: MNEST034663
species: Oryzias latipes
miRNA family: mir-430
source: miRBase, original name: ola-mir-430c-1 (MI0013009)

Taxonomy by NCBI:
Oryzias latipes Oryzias Oryziinae Adrianichthyidae Adrianichthyoidei Beloniformes Atherinomorpha Smegmamorpha Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAAGTGCTACATGTTGGGGTAG

miRNA*
ACCTTAACATAGGCACTGACT

mismatches: 3
bulges: 1

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pre-miRNA
CAGACATTCAGATGACCTTAACATAGGCACTGACTTGAATATCTTTGCAGTAAGTGCTACATGTTGGGGTAGTCTTGGTGTCTAGC

dot-bracket secondary structure
.((((((..((((.((((((((((.((((((.(((((((....)))).))).))))))..)))))))))).))))..))))))...


SIMILARITIES
miRBase ola-mir-430c-2: 4e-40

PMRD no hits

microPC no hits
UniProt no hits

RFAM miR-430: 4e-25

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: in-situ, Northern

references

[1] Tani S, Kusakabe R, Naruse K, Sakamoto H, Inoue K, Gene. 449:41-49(2010)., "Genomic organization and embryonic expression of miR-430 in medaka (Oryzias latipes): insights into the post-transcriptional gene regulation in early development"




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