ABOUT THIS RECORDspecies: Macaca mulatta
miRNA family: mir-190
source: miRBase, original name: mml-mir-190a (MI0002613)
Taxonomy by NCBI:
Macaca mulatta Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATATGTTTGATATATTAGGT miRNA* TATATATCAAACATATTCCT mismatches: 2 bulges: 2 |
pre-miRNA
TGCAGGCCTCTGTGTGATATGTTTGATATATTAGGTTGTTATTTAATCCAACTATATATCAAACATATTCCTACAGTGTCTTGCC
dot-bracket secondary structure
.(((((.(.(((((..(((((((((((((((..(((((..........))))))))))))))))))))..).)))).).))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
TGCAGGCCTCTGTGTGATATGTTTGATATATTAGGTTGTTATTTAATCCAACTATATATCAAACATATTCCTACAGTGTCTTGCC
dot-bracket secondary structure
.(((((.(.(((((..(((((((((((((((..(((((..........))))))))))))))))))))..).)))).).))))).
SIMILARITIES| miRBase cfa-mir-190a: 4e-43 PMRD no hits microPC no hits | UniProt no hits RFAM mir-190: 2e-39 |
Identical with: oan-mir-190a from miRBase (MNEST031518) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
