ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR171
source: miRBase, original name: gma-MIR171c (MI0016575)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGATATTGGTGCGGTTCAATC miRNA* TTGAGCCGTGCCAATATCACA mismatches: 3 bulges: 0 |
pre-miRNA
TTAAGAACTTGAGATATTGGTGCGGTTCAATCAGAAGGCAGTGTTTTATGATCCAAAAGCTCTGTGTTATTTGATTGAGCCGTGCCAATATCACATGTTA
TTGA
dot-bracket secondary structure
((((.(((.((.((((((((..((((((((((((((.((((.(((((........))))).)))).)..)))))))))))))..)))))))).)).))).
))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G, BMC Bioinformatics. 11 Suppl 1:S14(2010)., "Prediction of novel miRNAs and associated target genes in Glycine max"
TTAAGAACTTGAGATATTGGTGCGGTTCAATCAGAAGGCAGTGTTTTATGATCCAAAAGCTCTGTGTTATTTGATTGAGCCGTGCCAATATCACATGTTA
TTGA
dot-bracket secondary structure
((((.(((.((.((((((((..((((((((((((((.((((.(((((........))))).)))).)..)))))))))))))..)))))))).)).))).
))))
SIMILARITIES| miRBase mtr-MIR171f: 4e-31 PMRD ath-miR171c: 0.000000005 microPC miR171: 0.00000008 | UniProt no hits RFAM MIR171_1: 8e-30 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G, BMC Bioinformatics. 11 Suppl 1:S14(2010)., "Prediction of novel miRNAs and associated target genes in Glycine max"
