ABOUT THIS RECORDspecies: Glycine soja
miRNA family: MIR482
source: miRBase, original name: gso-MIR482a (MI0015359)
Taxonomy by NCBI:
Glycine soja Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTCCCTACACCTCCCATAC miRNA* ATGGGGGGATTGGGAAGGAA mismatches: 3 bulges: 1 |
pre-miRNA
GGGGAAGGCATGGGTATGGGGGGATTGGGAAGGAATATCCATAAGCAAAATATGCTATTTCTTCCCTACACCTCCCATACCACTGTTTTTCCT
dot-bracket secondary structure
((((((((((..(((((((((((...(((((((((((..((((.......)))).)))))))))))....)))))))))))..))))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Chen R, Hu Z, Zhang H, J Integr Plant Biol. 51:1071-1079(2009)., "Identification of microRNAs in wild soybean (Glycine soja)"
GGGGAAGGCATGGGTATGGGGGGATTGGGAAGGAATATCCATAAGCAAAATATGCTATTTCTTCCCTACACCTCCCATACCACTGTTTTTCCT
dot-bracket secondary structure
((((((((((..(((((((((((...(((((((((((..((((.......)))).)))))))))))....)))))))))))..))))))))))
SIMILARITIES| miRBase gso-MIR482b: 1e-40 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: gma-MIR482b from miRBase (MNEST040482) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Chen R, Hu Z, Zhang H, J Integr Plant Biol. 51:1071-1079(2009)., "Identification of microRNAs in wild soybean (Glycine soja)"
