miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040928
species: Medicago truncatula
miRNA family: MIR2647
source: miRBase, original name: mtr-MIR2647b (MI0011965)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATTCACGGGGACGAACCTCCT

miRNA*
 GAGGGTTGCCCCTGTTGAA

mismatches: 3
bulges: 1
View larger
pre-miRNA
 AATTCACGGGGACGAACCTCCTTCGTTGAAAGTTTGCTTTATTCTTTTGATATATCTATCCATGATACAAGGAAGTAATGCATTTAAGTTCAATCAAGCT
TGGCCTTCATCAGAATTTCCGTTGACGGGACTCCACAGGAGGTACAACCTTTAAGTTGATACTGAGGGATGGAGGGAGGGTTGCCCCTGTTGAA

dot-bracket secondary structure
..(((((((((.(((.((((((((.(((((..(.(((.(((((..((((...((((.......))))))))..))))).)))...)..))))).......
..((((((....((..(((((....))))).))....))))))....((((((.((....))))))))...)))))))).))).))))).))))


SIMILARITIES
miRBase mtr-MIR2647c: 9e-108

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits

Identical with: mtr-MIR2647c from miRBase (MNEST040929)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references
[1] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"



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