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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST054382
species: Phaseolus vulgaris
miRNA family: MIR482
source: PMRD, original name: pvu-miR482

Taxonomy by NCBI:
Phaseolus vulgaris Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCTTCCCAATTCCGCCCATTCC

miRNA*
 AATGGGCTGATTGGGAAGCAA

mismatches: 2
bulges: 1
View larger
pre-miRNA
 GGGATCCGGAGATTGGAGCAATCAGAATTTGTGGGAATGGGCTGATTGGGAAGCAATGTGTGCTGGTGCAATGCATTTAATTTCTTCCCAATTCCGCCCA
TTCCTATGATCTCTGATGATTCTTTCCTTTCCT

dot-bracket secondary structure
((((...((((...((((..((((((..(..(((((((((((.((((((((((.(((..((((.........))))...))).))))))))))..)))))
))))))..)..))))))..))))))))..))))


SIMILARITIES
miRBase pvu-MIR482: 1e-71

PMRD pvu-miR482: 1e-71

microPC miR482: 6e-37		UniProt no hits

RFAM no hits

Identical with: pvu-MIR482 from miRBase (MNEST041028)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL, Plant Mol Biol. 70:385-401(2009)., "Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress"



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