miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040396
species: Arachis hypogaea
miRNA family: MIR157
source: miRBase, original name: ahy-MIR156c (MI0015334)

Taxonomy by NCBI:
Arachis hypogaea Arachis Dalbergieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGACAGAAGAGAGAGAGCAC

miRNA*
 GCTCTCTACTCTTCTGTCATCA

mismatches: 1
bulges: 1
View larger
pre-miRNA
 CCTCGAAGAGATTATAAATGTTGACAGAAGAGAGAGAGCACAACCCGAGAAATGGTCAAAGAATCTTTTACCTTTGTTGGGAGTGTGCTCTCTACTCTTC
TGTCATCATCTTTATCTTTATTTGTATGGTATAGATCTT

dot-bracket secondary structure
((.(((((((((.....(((.(((((((((((((((((((((.(((((.(((.(((.((((...)))).)))))).)))))..)))))))))).))))))
))))).)))....)))))..))))...))..........


SIMILARITIES
miRBase ahy-MIR156a: 2e-61

PMRD ahy-miR157k: 4e-75

microPC miR157: 7e-43		UniProt no hits

RFAM mir-156: 0.0000000000001

Identical with: miR156 from microPC (MNEST046790)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references
[1] Zhao CZ, Xia H, Frazier TP, Yao YY, Bi YP, Li AQ, Li MJ, Li CS, Zhang BH, Wang XJ, BMC Plant Biol. 10:3(2010)., "Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)"



Liczniki na strone;