ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR156
source: miRBase, original name: gma-MIR156g (MI0016580)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACAGAAGATAGAGAGCACAG miRNA* GTGCTCTCTATCTTCTGTCA mismatches: 0 bulges: 0 |
pre-miRNA
TGAACAATATCTTGAACAGTTTGTTGACAGAAGATAGAGAGCACAGGTGATCATACCCAAAAAAGCTTTTGTGTGTGAGCAGTTTTGTGCTCTCTATCTT
CTGTCAATGTACTTCTCA
dot-bracket secondary structure
............(((..(((.((((((((((((((((((((((((((((.((((((.(((((....))))).)))))).))..)))))))))))))))))
))))))))).)))..)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G, BMC Bioinformatics. 11 Suppl 1:S14(2010)., "Prediction of novel miRNAs and associated target genes in Glycine max"
TGAACAATATCTTGAACAGTTTGTTGACAGAAGATAGAGAGCACAGGTGATCATACCCAAAAAAGCTTTTGTGTGTGAGCAGTTTTGTGCTCTCTATCTT
CTGTCAATGTACTTCTCA
dot-bracket secondary structure
............(((..(((.((((((((((((((((((((((((((((.((((((.(((((....))))).)))))).))..)))))))))))))))))
))))))))).)))..)))
SIMILARITIES| miRBase tcc-MIR156f: 0.0000000001 PMRD vvi-miR156i: 0.00000002 microPC miR157: 0.000001 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G, BMC Bioinformatics. 11 Suppl 1:S14(2010)., "Prediction of novel miRNAs and associated target genes in Glycine max"
