ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR167_1
source: miRBase, original name: gma-MIR167g (MI0016548)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTGA miRNA* AGATCATGTGGCTGCTTCACC mismatches: 2 bulges: 1 |
pre-miRNA
CAGCAGTTGAAGCTGCCAGCATGATCTGAGTTTACCTTCTATTGGTAAGAACAGATCATGTGGCTGCTTCACCTGTTG
dot-bracket secondary structure
((((((.((((((.((((.(((((((((..((((((.......))))))..))))))))))))).)))))).))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Solexa
references
[1] Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G, BMC Bioinformatics. 11 Suppl 1:S14(2010)., "Prediction of novel miRNAs and associated target genes in Glycine max"
CAGCAGTTGAAGCTGCCAGCATGATCTGAGTTTACCTTCTATTGGTAAGAACAGATCATGTGGCTGCTTCACCTGTTG
dot-bracket secondary structure
((((((.((((((.((((.(((((((((..((((((.......))))))..))))))))))))).)))))).))))))
SIMILARITIES| miRBase gso-MIR167a: 5e-39 PMRD gma-miR167n: 1e-30 microPC miR167: 1e-30 | UniProt no hits RFAM MIR167_1: 0.00000002 |
Identical with: gso-MIR167a from miRBase (MNEST040632) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Solexa
references
[1] Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G, BMC Bioinformatics. 11 Suppl 1:S14(2010)., "Prediction of novel miRNAs and associated target genes in Glycine max"
