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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040455
species: Glycine max
miRNA family: MIR171_2
source: miRBase, original name: gma-MIR171b (MI0007217)

Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ACGGCGTGATATTGGTACGGCTC

miRNA*
 GCCGAATCAATATCACTCTTGT

mismatches: 2
bulges: 1
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pre-miRNA
 TAGACACGGCGTGATATTGGTACGGCTCATCTTAATTCAACCATTATATCAACAATTGAGACGAGCCGAATCAATATCACTCTTGTTTGCTT

dot-bracket secondary structure
((((((.((.(((((((((((.((((((.((((((((................)))))))).)))))).))))))))))).))))))))...


SIMILARITIES
miRBase gma-MIR171b: 3e-47

PMRD gma-miR171b: 3e-47

microPC miR171: 0.000001		UniProt no hits

RFAM MIR171_2: 0.00000000002

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references
[1] Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G, BMC Bioinformatics. 11 Suppl 1:S14(2010)., "Prediction of novel miRNAs and associated target genes in Glycine max"
[2] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"



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