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Species belonging to selected taxon:
Arachis duranensis
,
Arachis hypogaea
,
Arachis ipaensis
,
Glycine soja
,
Glycyrrhiza uralensis
,
Lotus japonicus
,
Medicago sativa
,
Phaseolus acutifolius
,
Phaseolus coccineus
,
Pisum sativum
,
Trifolium pratense
,
Cajanus cajan
,
Cicer arietinum
,
Glycine max
,
Vigna unguiculata
,
Medicago truncatula
,
Phaseolus vulgaris
ABOUT THIS RECORD
ID:
MNEST040468
species:
Glycine max
miRNA family:
MIR390
source:
miRBase, original name:
gma-MIR390a
(
MI0007214
)
Taxonomy by NCBI:
Glycine max
Glycine
Phaseoleae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CGCTATCCATCCTGAGTTTC
miRNA*
AGCTCAGGAGGGATAGCGCC
mismatches:
2
bulges:
0
View larger
pre-miRNA
AGAATCTGTAA
AGCTCAGGAGGGATAGCGCC
ATGGATGATCTTCTCTTCACTCTTGATCTTCTCTTG
CGCTATCCATCCTGAGTTTC
ATGGCTTCTATCT
TCACA
dot-bracket secondary structure
((((.((((.(
(((((((((.(((((((((.
..(((.((((..............)))).)))...)
)))))))).)))))))))).
)))).))))....
.....
SIMILARITIES
miRBase
gma-MIR390a
:
6e-55
PMRD
ghr-miR390c
:
0.00000000000002
microPC
miR390
:
0.00000000009
UniProt
no hits
RFAM
MIR390: 1e-50
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
references
[
1
] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O,
BMC Genomics. 9:160(2008).
,
"Novel and nodulation-regulated microRNAs in soybean roots"