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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040470
species: Glycine max
miRNA family: MIR393
source: miRBase, original name: gma-MIR393 (MI0007216)

Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCCAAAGGGATCGCATTGATC

miRNA*
 TCATGCTATCCCTTTGGATT

mismatches: 1
bulges: 1
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pre-miRNA
 GGAGGAGGCATCCAAAGGGATCGCATTGATCCCAAATCCAAGCTTCAATATTCTTCTCTCTTTCCCACTCAAAATATTAATTTTATTTGGGATCATGCTA
TCCCTTTGGATTTCTCCTTT

dot-bracket secondary structure
.(((((((.((((((((((((.((((.((((((((((..(((.((.((((((....................)))))))).))))))))))))))))).)
))))))))))).))))))).


SIMILARITIES
miRBase vvi-MIR393b: 0.0000000000001

PMRD gma-miR393: 8e-64

microPC miR393: 0.000000006		UniProt no hits

RFAM no hits

Identical with: gma-miR393 from PMRD (MNEST048576)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454, Northern

references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"



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