ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR1508
source: miRBase, original name: gma-MIR1508a (MI0007220)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTAGAAAGGGAAATAGCAGTTG miRNA* ACTGCTATTCCCATTTCTAAACC mismatches: 1 bulges: 2 |
pre-miRNA
AATTGCTATCCAACTGCTATTCCCATTTCTAAACCTTGTTACACGAGCATCTTGATCAATGGTCTAGAAAGGGAAATAGCAGTTGAGTGGTGCTT
dot-bracket secondary structure
....((((..((((((((((((((.((((((.((((((.....((((...))))..))).))).))))))))).)))))))))))..))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Northern, cloned
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
[2] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
AATTGCTATCCAACTGCTATTCCCATTTCTAAACCTTGTTACACGAGCATCTTGATCAATGGTCTAGAAAGGGAAATAGCAGTTGAGTGGTGCTT
dot-bracket secondary structure
....((((..((((((((((((((.((((((.((((((.....((((...))))..))).))).))))))))).)))))))))))..))))....
SIMILARITIES| miRBase gso-MIR1508a: 5e-49 PMRD gma-miR1508a: 5e-49 microPC miR1508: 4e-37 | UniProt no hits RFAM no hits |
Identical with: gso-MIR1508a from miRBase (MNEST040637) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Northern, cloned
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
[2] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
