ABOUT THIS RECORDspecies: Glycine max
source: microPC, original name: miR171
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATAT miRNA* ATTGGCCTGGTTCACTCAGA mismatches: 2 bulges: 0 |
pre-miRNA
ATATTGGCCTGGTTCACTCAGACATGTATACCACGGCACGGTTGTGTCCTTGCTAGAAAGATTTAAAACAAAATACATGTTGTGATTGTGGTTTTGGGTT
TGATTGAGCCGTGCCAATAT
dot-bracket secondary structure
((((((((.(((((((.((((((......(((((((((((..(((((..(((.((((....))))...))).)))))...)))).))))))).....)))
))).))))))).))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
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ATATTGGCCTGGTTCACTCAGACATGTATACCACGGCACGGTTGTGTCCTTGCTAGAAAGATTTAAAACAAAATACATGTTGTGATTGTGGTTTTGGGTT
TGATTGAGCCGTGCCAATAT
dot-bracket secondary structure
((((((((.(((((((.((((((......(((((((((((..(((((..(((.((((....))))...))).)))))...)))).))))))).....)))
))).))))))).))))))))
SIMILARITIES| miRBase mtr-MIR171g: 0.000000000002 PMRD mtr-miR171g: 0.000000000002 microPC miR171: 8e-64 | UniProt no hits RFAM MIR171_1: 0.00000000003 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
download this record
