miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST001909
species: Phaseolus acutifolius
miRNA family: MIR159
source: miRNEST

Taxonomy by NCBI:
Phaseolus acutifolius Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGCTGCTTAGCTATGGATCCC

miRNA*
CTTCCATATCTGGGGAGCTTC

mismatches: 4
bulges: 0

View larger
pre-miRNA
ATGGAGTGGAGCTCCTTGAAGTCCAATTGAGGATCTTACTGGGTGGATTGAGCTGCTTAGCTATGGATCCCACAGTTCTACCCATCTGCATGTTTTGTGG
TAGTCTTGTGGCTTCCATATCTGGGGAGCTTCATCTGCCTCTATAGTATCATCCTTCTTTGGATTGAAGGGAGCTCTAC


dot-bracket secondary structure
.....((((((((((((..(((((((..((((((..((((((((((((.(((((.(((((.((((((..((((((..(((((((...........)).))
)))..))))))..)))))).))))).))))).))))))))....))))..))))))..)))))))..))))))))))))



SIMILARITIES
miRBase pvu-MIR159a: 2e-93

PMRD pvu-miR159: 2e-93

microPC miR159: 1e-66
UniProt no hits

RFAM MIR159: 2e-22
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;