ABOUT THIS RECORDspecies: Fragaria vesca
miRNA family: MIR1065
source: miRNEST
Taxonomy by NCBI:
Fragaria vesca Fragaria Potentilleae Rosodae Rosoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAGTCTCTGACTTCTCGCCT miRNA* TTGAGGAGAATGGAGGCGAAG mismatches: 4 bulges: 2 |
pre-miRNA
CAAGGCGGGGTTGCATCTCAAACGTTCGTCTTCAGTCTCTGACTTCTCGCCTGCGGCGGCGACGGCGGGGACGGCTGGGGTGAGAGAGGAGGAAGCAACG
ACGTGTCGTGTGCCGAGGCCGTGTGTGGTGCCTCTGATGAGAACGTGCTCGCTTCCGAGTGAAACGGAGGAGGAATGGAGGAAGAGGAAGGAGCTGCAGA
GCTTGAGGAGAATGGAGGCGAAGAGGAAGCGGTCGGAGAAGCAGCAGAGGA
dot-bracket secondary structure
.........(((((.((((...(((((.(((((.(((((((.(((((((...((.(((((..(((((...(((((((..((................)).
.)).))))).)))))..))))).((((((.(((((........(((.((..((((((.......)))))).)).))).....))))).....))))))..
)).)))))))..)))))))))))).))).))....)))).)))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CAAGGCGGGGTTGCATCTCAAACGTTCGTCTTCAGTCTCTGACTTCTCGCCTGCGGCGGCGACGGCGGGGACGGCTGGGGTGAGAGAGGAGGAAGCAACG
ACGTGTCGTGTGCCGAGGCCGTGTGTGGTGCCTCTGATGAGAACGTGCTCGCTTCCGAGTGAAACGGAGGAGGAATGGAGGAAGAGGAAGGAGCTGCAGA
GCTTGAGGAGAATGGAGGCGAAGAGGAAGCGGTCGGAGAAGCAGCAGAGGA
dot-bracket secondary structure
.........(((((.((((...(((((.(((((.(((((((.(((((((...((.(((((..(((((...(((((((..((................)).
.)).))))).)))))..))))).((((((.(((((........(((.((..((((((.......)))))).)).))).....))))).....))))))..
)).)))))))..)))))))))))).))).))....)))).)))))......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q94F39|AFP3_ARATH: 0.0000000000008 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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