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Species belonging to selected taxon:
Physcomitrella patens
ABOUT THIS RECORD
ID:
MNEST006988
species:
Physcomitrella patens
miRNA family:
MIR1217
source:
miRNEST
Taxonomy by NCBI:
Physcomitrella patens
Physcomitrella
Funariaceae
Funariales
Funariidae
Bryopsida
Moss Superclass V
Bryophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AATTTGAAGCATGATGTCAAG
miRNA*
TGGTATCATGTTGCAAATGGC
mismatches:
2
bulges:
0
View larger
pre-miRNA
AACTTGGAAGTTCCTGTTTCTGGTTGATCT
TGGTATCATGTTGCAAATGGC
AAAACCTGTGACCGGAATGGTACTCAGTTTTTGA
AATTTGAAGCATGAT
GTCAAG
TACAACGGAAGTTGGACGGTAGCTTTC
dot-bracket secondary structure
.....(((((((.((((((((.((((..((
((((((((((((.(((((..(
((((.(((..(((.....)))...))).))))).
.))))).))))))))
))))))
..))))...))..)))))).)))))))
SIMILARITIES
miRBase
ppt-MIR1217
:
2e-58
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
Identical with:
ppt-MIR1217
from miRBase (
MNEST039690
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record
deep sequencing data evidence