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Species belonging to selected taxon:
Physcomitrella patens
ABOUT THIS RECORD
ID:
MNEST039471
species:
Physcomitrella patens
miRNA family:
MIR166
source:
miRBase, original name:
ppt-MIR166h
(
MI0005911
)
Taxonomy by NCBI:
Physcomitrella patens
Physcomitrella
Funariaceae
Funariales
Funariidae
Bryopsida
Moss Superclass V
Bryophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCCC
miRNA*
GGAATGACGAGTGGCCCAGA
mismatches:
5
bulges:
1
View larger
pre-miRNA
AGTTCGACAAGACTATGAGACTTTGTCATGA
GGAATGACGAGTGGCCCAGA
TTCGTTTCTGGTCTAGAAATTGAATT
TCGGACCAGGCTTCATTCCCC
TT
GGCACGGTTCCATGGAGGTACTGTCA
dot-bracket secondary structure
.....((((..((((((..(((.(((((.(.
(((((((.(..(((((.(((
((((((((((...)))))).))))))
).)).)))..).))))))).)
.)
)))).)))..)))...)))..)))).
SIMILARITIES
miRBase
vvi-MIR166g
:
0.0000004
PMRD
ppt-miR166h
:
2e-67
microPC
miR166
:
0.000006
UniProt
no hits
RFAM
mir-166: 4e-38
Identical with:
ppt-miR166h
from PMRD (
MNEST051375
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
deep sequencing data evidence
references
[
1
] Axtell MJ, Snyder JA, Bartel DP,
Plant Cell. 19:1750-1769(2007).
,
"Common functions for diverse small RNAs of land plants"