miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Physcomitrella patens



ABOUT THIS RECORD

ID: MNEST006976
species: Physcomitrella patens
miRNA family: MIR1171
source: miRNEST

Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGGAGTGGAGTGGAGTGGAGT

miRNA*
GCCTTTTTATTCTGCCTCTT

mismatches: 4
bulges: 1

View larger
pre-miRNA
AGGCCTTGTTACTGTCGAAGCCTTCGAATAGGCGCCTTTTTATTCTGCCTCTTATCGGTTGCTTTCTTTCAAACAGGCCGCCCGGTTTGTTTGTGCATCT
GGCGTCGGTGATAGGATCAGGCCGGTGAAGTGTGCACGAAGTGTCTGTGAAAGAGACTTTGCGGGAGTGGAGTGGAGTGGAGTGAAGCCGGGGAGGCGTT
CGGCGTTCGCGGC


dot-bracket secondary structure
..(((.((..((.((((((((((((.....(((.((.((((((((((((((.((..((((.(((((...((.(((((((....))))..(((((((((((
..((((((((((...)))..))))))).)).))))))))).))).)).))))).)))).)).))).))))))))))).))......)))..)))))).))
)))))).)).)))



SIMILARITIES
miRBase cre-MIR1171: 0.00004

PMRD cre-miR1171: 0.00004

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record





Liczniki na strone;