ABOUT THIS RECORDspecies: Lottia gigantea
miRNA family: mir-34
source: miRBase, original name: lgi-mir-34 (MI0010111)
Taxonomy by NCBI:
Lottia gigantea Lottia Lottiidae Acmaeioidea Nacellina Docoglossa Eogastropoda Gastropoda Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGCAGTGTGGTTAGCTGGTAGT miRNA* AACCACTATCTACATTGCCCCG mismatches: 3 bulges: 1 |
pre-miRNA
AACAGAGTGGGTGTGGTTCTGTGGCAGTGTGGTTAGCTGGTAGTTCATGATTTAAAACAACCACTATCTACATTGCCCCGAAAACGCACAAAATGAACGA
C
dot-bracket secondary structure
..((...((.((((..(((.(.((((((((((.(((.((((.(((..........))).))))))).))))))))))).))).)))).))...)).....
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
AACAGAGTGGGTGTGGTTCTGTGGCAGTGTGGTTAGCTGGTAGTTCATGATTTAAAACAACCACTATCTACATTGCCCCGAAAACGCACAAAATGAACGA
C
dot-bracket secondary structure
..((...((.((((..(((.(.((((((((((.(((.((((.(((..........))).))))))).))))))))))).))).)))).))...)).....
.
SIMILARITIES| miRBase sko-mir-34: 0.00002 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
