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Species belonging to selected taxon:

Coffea canephora, Catharanthus roseus



ABOUT THIS RECORD

ID: MNEST002909
species: Catharanthus roseus
miRNA family: MIRf592
source: miRNEST

Taxonomy by NCBI:
Catharanthus roseus Catharanthus Vinceae Rauvolfioideae Apocynaceae Gentianales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGCAAGTTGTCTTTGGCTACA

miRNA*
CAGCCAAGGATGACTTGCCGA

mismatches: 1
bulges: 0

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pre-miRNA
ATTTCCATGTAGAAAGTAGTGTGCAGCCAAGGATGACTTGCCGACTGTTTTGCCGAGCGCGGAAATAAAATGCAGCTTTCTCTCTCTCTCTCTCTGTATA
TTTGCCGCCGTACGTATTTATACGAACTCCTCGGCAAGTTGTCTTTGGCTACATCCTACTTCCTTCATCTCTT


dot-bracket secondary structure
......(((.((.((((((.(((.((((((((((((((((((((..((((....))))((((....((.((((((..................)))))).
))..)))).((.((((....)))).))...)))))))))))))))))))).))).)))))).)).))).....



SIMILARITIES
miRBase ath-MIR169a: 0.000000000009

PMRD ath-miR169a: 0.000000000009

microPC miR169: 2e-37
UniProt no hits

RFAM MIR169_2: 0.0000000007
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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